The studies determined the effect of bacteria Bacillus spp. and Pseudomonas spp. isolated from the soil after carrot cultivation on pathogenic fungi Altenaria dauci, A. radicina, Fusarium oxysporum, F. solani, Rhizoctonia solani and Sclerotinia sclerotiorum. A field experiment on carrot cultivation considered different intercrop plants (rye, buckwheat, white mustard, sunflower). Rye and buckwheat were the most conducive to the growth of Bacillus spp. and Pseudomonas spp. Those bacteria were the most effective in inhibiting the growth of F. solani, F. oxysporum andR. solani. The antagonistic effect of soil-borne Bacillus spp. and Pseudomonas spp. towards the tested fungi was the largest after the application of rye and white mustard as intercrop plants in the cultivation of carrot. Buckwheat and sunflower showed a slightly smaller influence on the antagonistic activity of the studied bacteria. Bacillus ssp. had a significantly lesser antagonistic effect than Pseudomonas ssp.