Sediment accumulation in dam reservoirs significantly impacts hydropower efficiency and infrastructure sustainability. Bottom sediments often contain heavy metals such as Cr, Ni, Cu, Zn, Cd, and Pb, which can pose ecological risks and affect water quality. Moreover, excessive sedimentation reduces reservoir capacity, increases turbine wear, and raises operational costs, ultimately hindering energy production. This study examined the ecological risk of heavy metals in bottom sediments and explored predictive approaches to support sediment management. Using 27 sediment samples from Zemborzyce Lake, the concentrations of selected heavy metals were measured at two depths (5 cm and 30 cm). Ecological risk index (ERI) values for the deep layer were predicted based on surface data using artificial neural networks (ANNs) and multiple linear regression (MLR). Both models showed a high predictive accuracy, demonstrating the potential of data-driven methods in sediment quality assessment. The early identification of high-risk areas allows for targeted dredging and optimized maintenance planning, minimizing disruption to dam operations. Integrating predictive analytics into hydropower management enhances system resilience, environmental protection, and long-term energy efficiency.