Nectar is a major floral reward offered to pollinators by plants. In dichogamous plant species, differences in nectar production across sexual phases often occur, but both the male- and female-phase flowers have to attract pollinators to achieve effective pollination. Nectar-producing structures, i.e. floral nectaries, are a key component of floral organisation and architecture, and the knowledge of their structure and function contributes to better understanding of the plant–pollinator interactions. In the present study, we investigated the morphology and structure of nectaries and the nectar production pattern in two protandrous species Geranium macrorrhizum and G. phaeum. The flowers of the studied species have been shown to exhibit varied availability of nectar for insect visitors. Their nectaries differ in the shape, size and thickness. The other differences include the localisation of the stomatal field, the size and number of nectarostomata, the presence of non-glandular and glandular trichomes, the presence of tannin idioblasts, the mode of secretion and the occurrence of plastids functioning probably as autophagosomes and autolysosomes, whose presence in nectary cells has been described for the first time. The flowers of the studied species started nectar secretion in the non-receptive phase before pollen presentation and nectar was produced throughout both sexual phases. The nectar production was gender biased towards the female phase in the nectar amount, nectar sugar concentration and total sugar secreted in the nectar. We postulate that the nectar production patterns in G. phaeum and G. macrorrhizum might have evolved as a response to pollinators’ pressure.